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LOC106580020 UDP-glucuronosyltransferase 2A2-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106580020, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106580020
Gene description
UDP-glucuronosyltransferase 2A2-like
See related
Ensembl:ENSSSAG00000006310
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106580020 in Genome Data Viewer
Location:
chromosome: ssa20
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa20 NC_059461.1 (18081044..18086745, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa20 NC_027319.1 (17006217..17012206, complement)

Chromosome ssa20 - NC_059461.1Genomic Context describing neighboring genes Neighboring gene probable G-protein coupled receptor 21 Neighboring gene zinc finger and BTB domain-containing protein 26-like Neighboring gene uncharacterized LOC123729135 Neighboring gene LIM/homeobox protein Lhx6-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronosyltransferase 2A2-like; UDP-glucuronosyltransferase 2C1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059461.1 Reference Ssal_v3.1

    Range
    18081044..18086745 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014160567.2 → XP_014016042.1  UDP-glucuronosyltransferase 2A2-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3NKV6
    Related
    ENSSSAP00000012647.2, ENSSSAT00000013471.2
    Conserved Domains (2) summary
    PHA03392
    Location:6 → 487
    egt; ecdysteroid UDP-glucosyltransferase; Provisional
    pfam00201
    Location:22 → 494
    UDPGT; UDP-glucoronosyl and UDP-glucosyl transferase

  2. XM_014160566.2 → XP_014016041.1  UDP-glucuronosyltransferase 2C1-like isoform X1

    UniProtKB/TrEMBL
    A0A1S3NLF8
    Related
    ENSSSAP00000181565.1, ENSSSAT00000163136.1
    Conserved Domains (2) summary
    PHA03392
    Location:30 → 511
    egt; ecdysteroid UDP-glucosyltransferase; Provisional
    pfam00201
    Location:46 → 518
    UDPGT; UDP-glucoronosyl and UDP-glucosyl transferase
Nucleotide Protein
Heading Accession and Version

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