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LOC106579937 protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106579937, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106579937
Gene description
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
See related
Ensembl:ENSSSAG00000092435
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
Glyt
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Genomic context

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See LOC106579937 in Genome Data Viewer
Location:
chromosome: ssa02
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa02 NC_059443.1 (31525771..31549464, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa02 NC_027301.1 (20325798..20354677, complement)

Chromosome ssa02 - NC_059443.1Genomic Context describing neighboring genes Neighboring gene ectonucleoside triphosphate diphosphohydrolase 3 Neighboring gene Golgi-associated kinase 1A Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene FAST kinase domain-containing protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein O-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2
Names
glycosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059443.1 Reference Ssal_v3.1

    Range
    31525771..31549464 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014160377.2 → XP_014015852.1  protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2

    UniProtKB/TrEMBL
    A0A1S3NK83
    Related
    ENSSSAP00000164899.1, ENSSSAT00000179540.1
    Conserved Domains (2) summary
    cd00063
    Location:504 → 591
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam04577
    Location:270 → 406
    DUF563; Protein of unknown function (DUF563)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases