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fbxw4 F-box and WD repeat domain containing 4 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106576695, updated on 13-Mar-2024

Summary

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Gene symbol
fbxw4
Gene description
F-box and WD repeat domain containing 4
See related
Ensembl:ENSSSAG00000069868
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See fbxw4 in Genome Data Viewer
Location:
chromosome: ssa18
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa18 NC_059459.1 (14299532..14325134)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa18 NC_027317.1 (13013452..13038493)

Chromosome ssa18 - NC_059459.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 15a Neighboring gene fibroblast growth factor 8a Neighboring gene WW domain binding protein 1 like Neighboring gene steroid 17-alpha-hydroxylase/17,20 lyase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SCF ubiquitin ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
F-box and WD repeat domain containing 4; F-box/WD repeat-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059459.1 Reference Ssal_v3.1

    Range
    14299532..14325134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014154004.2 → XP_014009479.1  F-box/WD repeat-containing protein 4

    UniProtKB/TrEMBL
    B5XCQ6
    Related
    ENSSSAP00000143619.1, ENSSSAT00000253796.1
    Conserved Domains (3) summary
    sd00039
    Location:181 → 214
    7WD40; WD40 repeat [structural motif]
    pfam12937
    Location:3 → 46
    F-box-like
    cl29593
    Location:129 → 379
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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