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LOC106575089 alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A [ Salmo salar (Atlantic salmon) ]

Gene ID: 106575089, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106575089
Gene description
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A
See related
Ensembl:ENSSSAG00000006107
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106575089 in Genome Data Viewer
Location:
chromosome: ssa17
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa17 NC_059458.1 (9720642..9861927, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa17 NC_027316.1 (4569878..4705593, complement)

Chromosome ssa17 - NC_059458.1Genomic Context describing neighboring genes Neighboring gene carboxypeptidase B2 Neighboring gene Transmembrane protein 163 Neighboring gene parathyroid hormone 2 receptor-like Neighboring gene 1-acyl-sn-glycerol-3-phosphate acyltransferase gamma

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059458.1 Reference Ssal_v3.1

    Range
    9720642..9861927 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014151270.2 → XP_014006745.1  alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A

    UniProtKB/TrEMBL
    A0A1S3MUG7
    Related
    ENSSSAP00000012421.1, ENSSSAT00000013231.2
    Conserved Domains (2) summary
    pfam15024
    Location:172 → 726
    Glyco_transf_18; Glycosyltransferase family 18
    pfam15027
    Location:3 → 138
    DUF4525; Domain of unknown function (DUF4525)
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases