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LOC106574760 metabolism of cobalamin associated D [ Salmo salar (Atlantic salmon) ]

Gene ID: 106574760, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106574760
Gene description
metabolism of cobalamin associated D
See related
Ensembl:ENSSSAG00000092166
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
mmadhc
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Genomic context

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See LOC106574760 in Genome Data Viewer
Location:
chromosome: ssa16
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa16 NC_059457.1 (83354652..83360898, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa16 NC_027315.1 (77356725..77362904, complement)

Chromosome ssa16 - NC_059457.1Genomic Context describing neighboring genes Neighboring gene kinesin heavy chain-like Neighboring gene ly6/PLAUR domain-containing protein 6 Neighboring gene rho-related GTP-binding protein RhoE Neighboring gene uncharacterized LOC106574852

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cobalamin metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cobalamin trafficking protein CblD
Names
methylmalonic aciduria and homocystinuria, cblD type

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059457.1 Reference Ssal_v3.1

    Range
    83354652..83360898 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014150813.1 → XP_014006288.1  cobalamin trafficking protein CblD isoform X2

    UniProtKB/TrEMBL
    A0A1S3MST8
    Related
    ENSSSAP00000131697.1, ENSSSAT00000220066.1
    Conserved Domains (1) summary
    pfam10229
    Location:26 → 282
    DUF2246; Uncharacterized conserved protein (DUF2246)

  2. XM_014150810.1 → XP_014006285.1  cobalamin trafficking protein CblD isoform X1

    UniProtKB/TrEMBL
    A0A1S3MT58
    Related
    ENSSSAP00000171916.1, ENSSSAT00000240974.1
    Conserved Domains (1) summary
    pfam10229
    Location:26 → 292
    DUF2246; Uncharacterized conserved protein (DUF2246)

  3. XM_014150812.2 → XP_014006287.1  cobalamin trafficking protein CblD isoform X1

    UniProtKB/TrEMBL
    A0A1S3MT58
    Conserved Domains (1) summary
    pfam10229
    Location:26 → 292
    DUF2246; Uncharacterized conserved protein (DUF2246)

  4. XM_014150811.2 → XP_014006286.1  cobalamin trafficking protein CblD isoform X1

    UniProtKB/TrEMBL
    A0A1S3MT58
    Conserved Domains (1) summary
    pfam10229
    Location:26 → 292
    DUF2246; Uncharacterized conserved protein (DUF2246)
Nucleotide Protein
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