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LOC106572736 carbohydrate sulfotransferase 11-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106572736, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106572736
Gene description
carbohydrate sulfotransferase 11-like
See related
Ensembl:ENSSSAG00000099760
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106572736 in Genome Data Viewer
Location:
chromosome: ssa15
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa15 NC_059456.1 (97933500..97948090)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa15 NC_027314.1 (92651058..92664914)

Chromosome ssa15 - NC_059456.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106572777 Neighboring gene mitogen activated protein kinase p38b Neighboring gene toll-like leucine-rich repeat Neighboring gene Krueppel-like factor 15 Neighboring gene cilia- and flagella-associated protein 100

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059456.1 Reference Ssal_v3.1

    Range
    97933500..97948090
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014147175.2 → XP_014002650.2  carbohydrate sulfotransferase 11-like

    Related
    ENSSSAP00000167641.1, ENSSSAT00000239032.1
Nucleotide Protein
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