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LOC106571583 alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106571583, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106571583
Gene description
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like
See related
Ensembl:ENSSSAG00000065470
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106571583 in Genome Data Viewer
Location:
chromosome: ssa15
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa15 NC_059456.1 (52431831..52437277, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa15 NC_027314.1 (46877919..46883381, complement)

Chromosome ssa15 - NC_059456.1Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein 20 Neighboring gene uncharacterized LOC106571605 Neighboring gene ribosomal protein S29 Neighboring gene MAM domain-containing glycosylphosphatidylinositol anchor protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligosaccharide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi stack IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059456.1 Reference Ssal_v3.1

    Range
    52431831..52437277 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014144817.2 → XP_014000292.1  alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

    UniProtKB/TrEMBL
    A0A1S3MAU4
    Related
    ENSSSAP00000138639.1, ENSSSAT00000217091.1
    Conserved Domains (1) summary
    pfam05060
    Location:106 → 458
    MGAT2; N-acetylglucosaminyltransferase II (MGAT2)
Nucleotide Protein
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