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LOC106570220 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106570220, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106570220
Gene description
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like
See related
Ensembl:ENSSSAG00000009298
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106570220 in Genome Data Viewer
Location:
chromosome: ssa14
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa14 NC_059455.1 (70772421..70790531, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa14 NC_027313.1 (65013567..65031658, complement)

Chromosome ssa14 - NC_059455.1Genomic Context describing neighboring genes Neighboring gene cleavage and polyadenylation specificity factor subunit 1-like Neighboring gene Poly polymerase 10 Neighboring gene KH domain-containing, RNA-binding, signal transduction-associated protein 3 Neighboring gene protein FAM135B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059455.1 Reference Ssal_v3.1

    Range
    70772421..70790531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014142310.2 → XP_013997785.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3M3Z5
    Conserved Domains (1) summary
    pfam00777
    Location:79 → 273
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_014142309.2 → XP_013997784.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A1S3M4A8
    Related
    ENSSSAP00000138898.1, ENSSSAT00000235985.1
    Conserved Domains (1) summary
    pfam00777
    Location:79 → 333
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_045694747.1 → XP_045550703.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A1S3M4A8
    Conserved Domains (1) summary
    pfam00777
    Location:79 → 333
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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