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kirrel1b kirre like nephrin family adhesion molecule 1b [ Salmo salar (Atlantic salmon) ]

Gene ID: 106569584, updated on 30-Nov-2023

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
See related
Ensembl:ENSSSAG00000039360
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: ssa14
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa14 NC_059455.1 (43003902..43065872)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa14 NC_027313.1 (40246244..40303440)

Chromosome ssa14 - NC_059455.1Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene cell adhesion molecule 3 Neighboring gene NACHT, LRR and PYD domains-containing protein 1 homolog Neighboring gene SLAM family member 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059455.1 Reference Ssal_v3.1

    Range
    43003902..43065872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014141084.2 → XP_013996559.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A1S3M0B6, A0A1S3M0X0
    Related
    ENSSSAP00000152200.1, ENSSSAT00000247611.1
    Conserved Domains (7) summary
    cd05898
    Location:390 → 493
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:320 → 372
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:398 → 493
    IG_like; Immunoglobulin like
    pfam07679
    Location:313 → 388
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:226 → 278
    Ig_2; Immunoglobulin domain
    cl11960
    Location:138 → 218
    Ig; Immunoglobulin domain
    cl23807
    Location:753 → 855
    WWbp; WW-domain ligand protein

  2. XM_014141086.2 → XP_013996561.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A1S3M0B6, A0A1S3M0K7
    Related
    ENSSSAP00000162571.1, ENSSSAT00000157127.1
    Conserved Domains (7) summary
    cd05898
    Location:390 → 493
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00408
    Location:320 → 372
    IGc2; Immunoglobulin C-2 Type
    smart00410
    Location:398 → 493
    IG_like; Immunoglobulin like
    pfam07679
    Location:313 → 388
    I-set; Immunoglobulin I-set domain
    pfam13895
    Location:226 → 278
    Ig_2; Immunoglobulin domain
    cl11960
    Location:138 → 218
    Ig; Immunoglobulin domain
    cl23807
    Location:741 → 843
    WWbp; WW-domain ligand protein
Nucleotide Protein
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