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asph aspartate beta-hydroxylase [ Salmo salar (Atlantic salmon) ]

Gene ID: 106568874, updated on 13-Mar-2024

Summary

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Gene symbol
asph
Gene description
aspartate beta-hydroxylase
See related
Ensembl:ENSSSAG00000090177
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See asph in Genome Data Viewer
Location:
chromosome: ssa14
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa14 NC_059455.1 (16262832..16299065)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa14 NC_027313.1 (16083147..16115692)

Chromosome ssa14 - NC_059455.1Genomic Context describing neighboring genes Neighboring gene dual specificity protein phosphatase CDC14AB-like Neighboring gene xenotropic and polytropic retrovirus receptor 1 homolog Neighboring gene tocopherol (alpha) transfer protein (ataxia (Friedreich-like) with vitamin E deficiency) Neighboring gene U6 spliceosomal RNA Neighboring gene chromodomain helicase DNA binding protein 7 Neighboring gene RAB2A, member RAS oncogene family

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059455.1 Reference Ssal_v3.1

    Range
    16262832..16299065
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045693988.1 → XP_045549944.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Related
    ENSSSAP00000168229.1, ENSSSAT00000238123.1

  2. XM_045693995.1 → XP_045549951.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    Related
    ENSSSAP00000126242.1, ENSSSAT00000206746.1

  3. XM_045693996.1 → XP_045549952.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

  4. XM_045693986.1 → XP_045549942.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

  5. XM_045693990.1 → XP_045549946.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

  6. XM_045693989.1 → XP_045549945.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

  7. XM_045693994.1 → XP_045549950.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

  8. XM_045693991.1 → XP_045549947.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

  9. XM_045693997.1 → XP_045549953.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

  10. XM_045693987.1 → XP_045549943.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

  11. XM_045693992.1 → XP_045549948.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

  12. XM_045693993.1 → XP_045549949.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

Nucleotide Protein
Heading Accession and Version

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