LOC106568467 calpain 3a, (p94) [Salmo salar (Atlantic salmon)] - Gene

Summary

Gene symbol: LOC106568467
Gene description: calpain 3a, (p94)
See related: Ensembl:ENSSSAG00000000059
Gene type: protein coding
RefSeq status: MODEL
Organism: Salmo salar
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as: capn3; capn3a
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Genomic context

Location:: chromosome: ssa01

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
102	current	Ssal_v3.1 (GCF_905237065.1)	ssa01	NC_059442.1 (3090370..3129908, complement)
100	previous assembly	ICSASG_v2 (GCF_000233375.1)	ssa01	NC_027300.1 (1614959..1669305, complement)

Chromosome ssa01 - NC_059442.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables calcium ion binding	IEA Inferred from Electronic Annotation more info	PubMed
enables calcium-dependent cysteine-type endopeptidase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in negative regulation of apoptotic process	IEA Inferred from Electronic Annotation more info	PubMed
involved_in proteolysis	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: calpain-3

Names: calpain 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

NC_059442.1 Reference Ssal_v3.1

Range

3090370..3129908 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_045705588.1 → XP_045561544.1 calpain-3 isoform X1
XM_045705619.1 → XP_045561575.1 calpain-3 isoform X2

Related

ENSSSAP00000000061.2, ENSSSAT00000000085.2
XM_014139198.2 → XP_013994673.1 calpain-3 isoform X3

UniProtKB/TrEMBL

A0A1S3LUL0

Conserved Domains (4) summary

COG5126
Location:619 → 707

FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

pfam00648
Location:51 → 351

Peptidase_C2; Calpain family cysteine protease

pfam01067
Location:365 → 515

Calpain_III; Calpain large subunit, domain III

cl08302
Location:560 → 616

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
XM_014139972.2 → XP_013995447.1 calpain-3 isoform X4

UniProtKB/TrEMBL

A0A1S3LWZ7

Conserved Domains (4) summary

COG5126
Location:616 → 704

FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]

pfam00648
Location:51 → 351

Peptidase_C2; Calpain family cysteine protease

pfam01067
Location:365 → 515

Calpain_III; Calpain large subunit, domain III

cl08302
Location:560 → 613

EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...