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LOC106568000 delta-sarcoglycan-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106568000, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106568000
Gene description
delta-sarcoglycan-like
See related
Ensembl:ENSSSAG00000058211
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106568000 in Genome Data Viewer
Location:
chromosome: ssa13
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa13 NC_059454.1 (75888180..76239488, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa13 NC_027312.1 (71251912..71590590, complement)

Chromosome ssa13 - NC_059454.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7 Neighboring gene uncharacterized LOC106568069 Neighboring gene 39S ribosomal protein L22, mitochondrial Neighboring gene gem-associated protein 5-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059454.1 Reference Ssal_v3.1

    Range
    75888180..76239488 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014137970.2 → XP_013993445.1  delta-sarcoglycan-like isoform X1

    UniProtKB/TrEMBL
    A0A1S3LRJ4
    Related
    ENSSSAP00000064491.2, ENSSSAT00000095285.2
    Conserved Domains (1) summary
    pfam04790
    Location:86 → 336
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_014137971.2 → XP_013993446.1  delta-sarcoglycan-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3LRF4
    Related
    ENSSSAP00000064494.1, ENSSSAT00000095290.2
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases