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LOC106565682 ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase [ Salmo salar (Atlantic salmon) ]

Gene ID: 106565682, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106565682
Gene description
ALG1 chitobiosyldiphosphodolichol beta-mannosyltransferase
See related
Ensembl:ENSSSAG00000085267
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
alg1
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Genomic context

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See LOC106565682 in Genome Data Viewer
Location:
chromosome: ssa06
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa06 NC_059447.1 (6182277..6203203, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa12 NC_027311.1 (59097058..59114286)

Chromosome ssa06 - NC_059447.1Genomic Context describing neighboring genes Neighboring gene ras-related protein Rab-40C Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class Q Neighboring gene eukaryotic elongation factor 2 lysine methyltransferase Neighboring gene UPF0764 protein C16orf89 homolog Neighboring gene intraflagellar transport 70

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitobiosyldiphosphodolichol beta-mannosyltransferase; uncharacterized protein LOC106565682

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059447.1 Reference Ssal_v3.1

    Range
    6182277..6203203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014133053.2 → XP_013988528.1  chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X7

    UniProtKB/TrEMBL
    A0A1S3LC42
    Related
    ENSSSAP00000105775.2, ENSSSAT00000140485.2
    Conserved Domains (2) summary
    cd03816
    Location:61 → 471
    GT1_ALG1_like; This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and ...
    PLN02275
    Location:61 → 432
    PLN02275; transferase, transferring glycosyl groups

  2. XM_014133052.2 → XP_013988527.1  chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X6

    UniProtKB/TrEMBL
    A0A1S3LC40
    Related
    ENSSSAP00000105777.2, ENSSSAT00000140486.2
    Conserved Domains (2) summary
    cd03816
    Location:61 → 491
    GT1_ALG1_like; This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and ...
    PLN02275
    Location:61 → 452
    PLN02275; transferase, transferring glycosyl groups

  3. XM_045719659.1 → XP_045575615.1  uncharacterized protein LOC106565682 isoform X5

  4. XM_045719657.1 → XP_045575613.1  uncharacterized protein LOC106565682 isoform X3

  5. XM_045719656.1 → XP_045575612.1  uncharacterized protein LOC106565682 isoform X2

  6. XM_045719658.1 → XP_045575614.1  uncharacterized protein LOC106565682 isoform X4

  7. XM_045719655.1 → XP_045575611.1  uncharacterized protein LOC106565682 isoform X1

  8. XM_045719660.1 → XP_045575616.1  chitobiosyldiphosphodolichol beta-mannosyltransferase isoform X8

Nucleotide Protein
Heading Accession and Version

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