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LOC106565240 carbohydrate sulfotransferase 11-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106565240, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106565240
Gene description
carbohydrate sulfotransferase 11-like
See related
Ensembl:ENSSSAG00000007221
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa12
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa12 NC_059453.1 (47932742..47961058, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa12 NC_027311.1 (40436949..40465205, complement)

Chromosome ssa12 - NC_059453.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 394 Neighboring gene solute carrier family 41 member 1-like Neighboring gene thioredoxin reductase 1, cytoplasmic Neighboring gene Bridging integrator 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059453.1 Reference Ssal_v3.1

    Range
    47932742..47961058 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014132135.2 → XP_013987610.1  carbohydrate sulfotransferase 11-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3L9U8
    Conserved Domains (1) summary
    pfam03567
    Location:49 → 280
    Sulfotransfer_2; Sulfotransferase family

  2. XM_014132133.2 → XP_013987608.1  carbohydrate sulfotransferase 11-like isoform X1

    UniProtKB/TrEMBL
    A0A1S3L9G4
    Related
    ENSSSAP00000014758.1, ENSSSAT00000015682.2
    Conserved Domains (1) summary
    pfam03567
    Location:101 → 332
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
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