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si:dkey-175m17.6 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106563486, updated on 13-Mar-2024

Summary

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Gene symbol
si:dkey-175m17.6
Gene description
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2
See related
Ensembl:ENSSSAG00000050806
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See si:dkey-175m17.6 in Genome Data Viewer
Location:
chromosome: ssa11
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa11 NC_059452.1 (90050435..90053758)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa11 NC_027310.1 (75602584..75605860)

Chromosome ssa11 - NC_059452.1Genomic Context describing neighboring genes Neighboring gene RNA-binding protein lark-like Neighboring gene serine/threonine-protein kinase MARK2-like Neighboring gene U4/U6.U5 tri-snRNP-associated protein 1-like Neighboring gene barrier-to-autointegration factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059452.1 Reference Ssal_v3.1

    Range
    90050435..90053758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045690034.1 → XP_045545990.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2

    UniProtKB/TrEMBL
    A0A1S3L0W6
    Related
    ENSSSAP00000169410.1, ENSSSAT00000184177.1
    Conserved Domains (1) summary
    cl21608
    Location:187 → 399
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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