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LOC106561452 polypeptide N-acetylgalactosaminyltransferase 18 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106561452, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106561452
Gene description
polypeptide N-acetylgalactosaminyltransferase 18
See related
Ensembl:ENSSSAG00000063358
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106561452 in Genome Data Viewer
Location:
chromosome: ssa10
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa10 NC_059451.1 (107984170..108098211)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa10 NC_027309.1 (98872734..98994178)

Chromosome ssa10 - NC_059451.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106561465 Neighboring gene uncharacterized LOC106561466 Neighboring gene uncharacterized si:ch211-176l24.4 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class Y Neighboring gene BTB/POZ domain-containing protein 10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059451.1 Reference Ssal_v3.1

    Range
    107984170..108098211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014125425.2 → XP_013980900.1  polypeptide N-acetylgalactosaminyltransferase 18

    UniProtKB/TrEMBL
    A0A1S3KQN0, A0A1S3MK98
    Related
    ENSSSAP00000179186.1, ENSSSAT00000231084.1
    Conserved Domains (4) summary
    cd02510
    Location:162 → 463
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:476 → 603
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:474 → 601
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam10111
    Location:163 → 427
    Glyco_tranf_2_2; Glycosyltransferase like family 2
Nucleotide Protein
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