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LOC106561444 carbohydrate sulfotransferase 1-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106561444, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106561444
Gene description
carbohydrate sulfotransferase 1-like
See related
Ensembl:ENSSSAG00000092172
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106561444 in Genome Data Viewer
Location:
chromosome: ssa10
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa10 NC_059451.1 (104063188..104070583, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa10 NC_027309.1 (95036840..95043995, complement)

Chromosome ssa10 - NC_059451.1Genomic Context describing neighboring genes Neighboring gene tubulin alpha-1C chain-like Neighboring gene transmembrane protein 263 Neighboring gene transcription termination factor 2, mitochondrial Neighboring gene cryptochrome circadian regulator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059451.1 Reference Ssal_v3.1

    Range
    104063188..104070583 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014125408.2 → XP_013980883.1  carbohydrate sulfotransferase 1-like

    UniProtKB/TrEMBL
    A0A1S3KQB9
    Related
    ENSSSAP00000179465.1, ENSSSAT00000162723.1
    Conserved Domains (1) summary
    cl21551
    Location:216 → 401
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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