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LOC106560500 torsin-1A-interacting protein 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106560500, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106560500
Gene description
torsin-1A-interacting protein 2
See related
Ensembl:ENSSSAG00000082801
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106560500 in Genome Data Viewer
Location:
chromosome: ssa10
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa10 NC_059451.1 (52429521..52434420, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa10 NC_027309.1 (43416302..43421249, complement)

Chromosome ssa10 - NC_059451.1Genomic Context describing neighboring genes Neighboring gene unconventional SNARE in the ER 1 homolog (S. cerevisiae) Neighboring gene uncharacterized LOC106560505 Neighboring gene uncharacterized LOC123724425 Neighboring gene torsin-1A-interacting protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059451.1 Reference Ssal_v3.1

    Range
    52429521..52434420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014123463.2 → XP_013978938.1  torsin-1A-interacting protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A1S3KJM5
    Related
    ENSSSAP00000181572.1, ENSSSAT00000221120.1
    Conserved Domains (1) summary
    pfam05609
    Location:324 → 540
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_014123464.2 → XP_013978939.1  torsin-1A-interacting protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A1S3KKT2
    Related
    ENSSSAP00000137444.1, ENSSSAT00000237295.1
    Conserved Domains (1) summary
    pfam05609
    Location:323 → 539
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
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