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ASPH aspartate beta-hydroxylase [ Thamnophis sirtalis ]

Gene ID: 106550102, updated on 13-Mar-2024

Summary

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Gene symbol
ASPH
Gene description
aspartate beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Thamnophis sirtalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
Orthologs
human mouse all
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Genomic context

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See ASPH in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current Thamnophis_sirtalis-6.0 (GCF_001077635.1) Unplaced Scaffold NW_013659123.1 (39493..70717, complement)

NW_013659123.1Genomic Context describing neighboring genes Neighboring gene clavesin 1 Neighboring gene uncharacterized LOC106550104 Neighboring gene sodium/potassium-transporting ATPase subunit beta-1-interacting protein 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013659123.1 Unplaced Scaffold Reference Thamnophis_sirtalis-6.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thamnophis sirtalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Thamnophis_sirtalis-6.0

Genomic

  1. NW_013659123.1 Reference Thamnophis_sirtalis-6.0

    Range
    39493..70717 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014067899.1 → XP_013923374.1  aspartyl/asparaginyl beta-hydroxylase

    UniProtKB/TrEMBL
    A0A6I9YHC6
    Conserved Domains (3) summary
    sd00006
    Location:46 → 72
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:215 → 368
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
    pfam13414
    Location:46 → 109
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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