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AGRN agrin [ Thamnophis sirtalis ]

Gene ID: 106538772, updated on 13-Mar-2024

Summary

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Gene symbol
AGRN
Gene description
agrin
Gene type
protein coding
RefSeq status
MODEL
Organism
Thamnophis sirtalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See AGRN in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Thamnophis_sirtalis-6.0 (GCF_001077635.1) Unplaced Scaffold NW_013657862.1 (867937..897620, complement)

NW_013657862.1Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting accessory protein 2 Neighboring gene CBP80/20-dependent translation initiation factor-like Neighboring gene disks large homolog 2-like Neighboring gene multiple C2 and transmembrane domain-containing protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013657862.1 Unplaced Scaffold Reference Thamnophis_sirtalis-6.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
agrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thamnophis sirtalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Thamnophis_sirtalis-6.0

Genomic

  1. NW_013657862.1 Reference Thamnophis_sirtalis-6.0

    Range
    867937..897620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014053386.1 → XP_013908861.1  agrin

    UniProtKB/TrEMBL
    A0A6I9X3I1
    Conserved Domains (6) summary
    smart00280
    Location:102 → 146
    KAZAL; Kazal type serine protease inhibitors
    smart00200
    Location:622 → 747
    SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
    cd00110
    Location:866 → 1016
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00008
    Location:825 → 853
    EGF; EGF-like domain
    pfam00053
    Location:275 → 326
    Laminin_EGF; Laminin EGF domain
    cl22861
    Location:1158 → 1240
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
Nucleotide Protein
Heading Accession and Version

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