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LOC106537964 tight junction protein ZO-2-like [ Thamnophis sirtalis ]

Gene ID: 106537964, updated on 22-Oct-2023

Summary

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Gene symbol
LOC106537964
Gene description
tight junction protein ZO-2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Thamnophis sirtalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Colubroidea; Colubridae; Natricinae; Thamnophis
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Genomic context

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See LOC106537964 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
17
Annotation release Status Assembly Chr Location
100 current Thamnophis_sirtalis-6.0 (GCF_001077635.1) Unplaced Scaffold NW_013657689.1 (1043901..1122059, complement)

NW_013657689.1Genomic Context describing neighboring genes Neighboring gene amyloid beta precursor protein binding family A member 1 Neighboring gene endosomal transmembrane epsin interactor 1 Neighboring gene tight junction protein ZO-2-like Neighboring gene frataxin Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 beta

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013657689.1 Unplaced Scaffold Reference Thamnophis_sirtalis-6.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment of endothelial intestinal barrier IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of blood-brain barrier permeability IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein localization to cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tight junction protein ZO-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Thamnophis sirtalis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Thamnophis_sirtalis-6.0

Genomic

  1. NW_013657689.1 Reference Thamnophis_sirtalis-6.0

    Range
    1043901..1122059 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014052299.1 → XP_013907774.1  tight junction protein ZO-2-like isoform X2

    UniProtKB/TrEMBL
    A0A6I9WXW1
    Conserved Domains (4) summary
    smart00228
    Location:264 → 343
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:9 → 94
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00595
    Location:471 → 548
    PDZ; PDZ domain (Also known as DHR or GLGF)
    cl17036
    Location:563 → 625
    SH3; Src Homology 3 domain superfamily

  2. XM_014052282.1 → XP_013907757.1  tight junction protein ZO-2-like isoform X1

    UniProtKB/TrEMBL
    A0A6I9X1Q6
    Conserved Domains (4) summary
    smart00228
    Location:288 → 367
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:33 → 118
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00595
    Location:495 → 572
    PDZ; PDZ domain (Also known as DHR or GLGF)
    cl17036
    Location:587 → 649
    SH3; Src Homology 3 domain superfamily

  3. XM_014052289.1 → XP_013907764.1  tight junction protein ZO-2-like isoform X2

    UniProtKB/TrEMBL
    A0A6I9WXW1
    Conserved Domains (4) summary
    smart00228
    Location:264 → 343
    PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
    cd00992
    Location:9 → 94
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    pfam00595
    Location:471 → 548
    PDZ; PDZ domain (Also known as DHR or GLGF)
    cl17036
    Location:563 → 625
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
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