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LOC106537237 calpain-3-like [ Austrofundulus limnaeus ]

Gene ID: 106537237, updated on 19-Oct-2023

Summary

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Gene symbol
LOC106537237
Gene description
calpain-3-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC106537237 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013954596.1 (10582..23069)

NW_013954596.1Genomic Context describing neighboring genes Neighboring gene tyrosine-protein phosphatase non-receptor type 12-like Neighboring gene nuclear receptor-binding protein-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013954596.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calpain-3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013954596.1 Reference Austrofundulus_limnaeus-1.0

    Range
    10582..23069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014034623.1 → XP_013890077.1  calpain-3-like

    UniProtKB/TrEMBL
    A0A2I4DCX8
    Conserved Domains (5) summary
    COG5126
    Location:671 → 759
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    cd00051
    Location:644 → 698
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam00648
    Location:78 → 372
    Peptidase_C2; Calpain family cysteine protease
    pfam01067
    Location:386 → 536
    Calpain_III; Calpain large subunit, domain III
    pfam16648
    Location:540 → 577
    Calpain_u2; Unstructured region on Calpain-3
Nucleotide Protein
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