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tmtc2b transmembrane O-mannosyltransferase targeting cadherins 2b [ Austrofundulus limnaeus ]

Gene ID: 106537218, updated on 13-Mar-2024

Summary

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Gene symbol
tmtc2b
Gene description
transmembrane O-mannosyltransferase targeting cadherins 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
zebrafish all
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Genomic context

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See tmtc2b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952409.1 (5602343..5697364, complement)

NW_013952409.1Genomic Context describing neighboring genes Neighboring gene bicaudal D homolog 1a Neighboring gene solute carrier family 23 member 4 Neighboring gene calcium release activated channel regulator 2Aa Neighboring gene protein arginine N-methyltransferase 8-B

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952409.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952409.1 Reference Austrofundulus_limnaeus-1.0

    Range
    5602343..5697364 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014034603.1 → XP_013890057.1  transmembrane and TPR repeat-containing protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A2I4DCV0
    Conserved Domains (4) summary
    COG0457
    Location:514 → 819
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:501 → 529
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:501 → 528
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:249 → 323
    DUF1736; Domain of unknown function (DUF1736)

  2. XM_014034608.1 → XP_013890062.1  transmembrane and TPR repeat-containing protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A2I4DCW5
    Conserved Domains (6) summary
    sd00006
    Location:254 → 282
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:254 → 281
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:2 → 76
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:254 → 315
    TPR_11; TPR repeat
    pfam13424
    Location:318 → 395
    TPR_12; Tetratricopeptide repeat
    pfam13432
    Location:510 → 574
    TPR_16; Tetratricopeptide repeat
Nucleotide Protein
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