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LOC106537038 probable polypeptide N-acetylgalactosaminyltransferase 8 [ Austrofundulus limnaeus ]

Gene ID: 106537038, updated on 19-Oct-2023

Summary

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Gene symbol
LOC106537038
Gene description
probable polypeptide N-acetylgalactosaminyltransferase 8
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC106537038 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952409.1 (5275132..5291836)

NW_013952409.1Genomic Context describing neighboring genes Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene NADH:ubiquinone oxidoreductase subunit A9a Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene RIB43A domain with coiled-coils 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952409.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polypeptide N-acetylgalactosaminyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952409.1 Reference Austrofundulus_limnaeus-1.0

    Range
    5275132..5291836
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014034406.1 → XP_013889860.1  probable polypeptide N-acetylgalactosaminyltransferase 8

    UniProtKB/TrEMBL
    A0A2I4DC95, A0A2I4DC99
    Conserved Domains (3) summary
    cd02510
    Location:187 → 488
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:507 → 622
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:499 → 620
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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