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gys2 glycogen synthase 2 [ Austrofundulus limnaeus ]

Gene ID: 106528487, updated on 18-Sep-2024

Summary

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Gene symbol
gys2
Gene description
glycogen synthase 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
human zebrafish all
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Genomic context

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See gys2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
18
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952787.1 (488418..522988)

NW_013952787.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 25 member 3a Neighboring gene uncharacterized LOC106528491 Neighboring gene thymopoietin Neighboring gene serine/threonine kinase receptor associated protein Neighboring gene uncharacterized LOC106528484 Neighboring gene spexin hormone

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952787.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycogen [starch] synthase, liver-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952787.1 Reference Austrofundulus_limnaeus-1.0

    Range
    488418..522988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014023666.1 → XP_013879120.1  glycogen [starch] synthase, liver-like

    UniProtKB/TrEMBL
    A0A2I4CGK5
    Conserved Domains (2) summary
    cd03793
    Location:28 → 617
    GT1_Glycogen_synthase_GSY2_like; Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the ...
    pfam05693
    Location:33 → 656
    Glycogen_syn; Glycogen synthase

  2. XM_014023667.1 → XP_013879121.1  glycogen [starch] synthase, liver-like

    UniProtKB/TrEMBL
    A0A2I4CGK5
    Conserved Domains (2) summary
    cd03793
    Location:28 → 617
    GT1_Glycogen_synthase_GSY2_like; Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the ...
    pfam05693
    Location:33 → 656
    Glycogen_syn; Glycogen synthase
Nucleotide Protein
Heading Accession and Version

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