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galnt6 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6) [ Austrofundulus limnaeus ]

Gene ID: 106525191, updated on 13-Mar-2024

Summary

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Gene symbol
galnt6
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6 (GalNAc-T6)
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
zebrafish all
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Genomic context

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See galnt6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952405.1 (5896224..5906323, complement)

NW_013952405.1Genomic Context describing neighboring genes Neighboring gene ceramide kinase family protein Neighboring gene N-alpha-acetyltransferase 10, NatA catalytic subuni Neighboring gene adenylate cyclase type 6-like Neighboring gene calcium channel, voltage-dependent, beta 3b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952405.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952405.1 Reference Austrofundulus_limnaeus-1.0

    Range
    5896224..5906323 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014019353.1 → XP_013874807.1  polypeptide N-acetylgalactosaminyltransferase 6-like

    UniProtKB/TrEMBL
    A0A2I4C475
    Conserved Domains (4) summary
    cd02510
    Location:176 → 481
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:495 → 619
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:494 → 617
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:173 → 407
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  2. XM_014019343.1 → XP_013874797.1  polypeptide N-acetylgalactosaminyltransferase 6-like

    UniProtKB/TrEMBL
    A0A2I4C475
    Conserved Domains (4) summary
    cd02510
    Location:176 → 481
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:495 → 619
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:494 → 617
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:173 → 407
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  3. XM_014019337.1 → XP_013874791.1  polypeptide N-acetylgalactosaminyltransferase 6-like

    UniProtKB/TrEMBL
    A0A2I4C475
    Conserved Domains (4) summary
    cd02510
    Location:176 → 481
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:495 → 619
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:494 → 617
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:173 → 407
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
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