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LOC106520655 carbohydrate sulfotransferase 12-like [ Austrofundulus limnaeus ]

Gene ID: 106520655, updated on 19-Oct-2023

Summary

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Gene symbol
LOC106520655
Gene description
carbohydrate sulfotransferase 12-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
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Genomic context

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See LOC106520655 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952498.1 (250529..263955, complement)

NW_013952498.1Genomic Context describing neighboring genes Neighboring gene interleukin 2 receptor, beta Neighboring gene C1q and TNF related 6a Neighboring gene caspase recruitment domain family, member 11 Neighboring gene adaptor related protein complex 5 subunit zeta 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952498.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: carbohydrate sulfotransferase 12-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952498.1 Reference Austrofundulus_limnaeus-1.0

    Range
    250529..263955 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014012862.1 → XP_013868316.1  LOW QUALITY PROTEIN: carbohydrate sulfotransferase 12-like

    UniProtKB/TrEMBL
    A0A2I4BKP6
    Conserved Domains (1) summary
    pfam03567
    Location:160 → 405
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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