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chpf2 chondroitin polymerizing factor 2 [ Austrofundulus limnaeus ]

Gene ID: 106517476, updated on 13-Mar-2024

Summary

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Gene symbol
chpf2
Gene description
chondroitin polymerizing factor 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
human zebrafish all
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Genomic context

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See chpf2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
5
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952451.1 (477577..486224, complement)

NW_013952451.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor, X-box binding 1 Neighboring gene SWI/SNF related BAF chromatin remodeling complex subunit D3b Neighboring gene uncharacterized LOC106517475 Neighboring gene ATP binding cassette subfamily F member 2 Neighboring gene solute carrier family 4 member 2b

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952451.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate glucuronyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952451.1 Reference Austrofundulus_limnaeus-1.0

    Range
    477577..486224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014008337.1 → XP_013863791.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    A0A2I4B7S2
    Conserved Domains (2) summary
    pfam05679
    Location:242 → 746
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:173 → 268
    Galactosyl_T; Galactosyltransferase

  2. XM_014008336.1 → XP_013863790.1  chondroitin sulfate glucuronyltransferase

    UniProtKB/TrEMBL
    A0A2I4B7S2
    Conserved Domains (2) summary
    pfam05679
    Location:242 → 746
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
    cl21608
    Location:173 → 268
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
Heading Accession and Version

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