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xylt2 xylosyltransferase II [ Austrofundulus limnaeus ]

Gene ID: 106516486, updated on 12-Sep-2024

Summary

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Gene symbol
xylt2
Gene description
xylosyltransferase II
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
human zebrafish all
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Genomic context

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See xylt2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952440.1 (243478..261145, complement)

NW_013952440.1Genomic Context describing neighboring genes Neighboring gene Na(+)/H(+) exchange regulatory cofactor NHE-RF1-like Neighboring gene RAB37, member RAS oncogene family Neighboring gene uncharacterized LOC106516490 Neighboring gene butyrophilin subfamily 3 member A3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952440.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein xylosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heparan sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xylosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952440.1 Reference Austrofundulus_limnaeus-1.0

    Range
    243478..261145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014006880.1 → XP_013862334.1  xylosyltransferase 2

    UniProtKB/TrEMBL
    A0A2I4B3K6
    Conserved Domains (2) summary
    pfam02485
    Location:245 → 497
    Branch; Core-2/I-Branching enzyme
    pfam12529
    Location:530 → 708
    Xylo_C; Xylosyltransferase C terminal
Nucleotide Protein
Heading Accession and Version

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