U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

sgcd sarcoglycan, delta (dystrophin-associated glycoprotein) [ Austrofundulus limnaeus ]

Gene ID: 106514678, updated on 13-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
sgcd
Gene description
sarcoglycan, delta (dystrophin-associated glycoprotein)
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See sgcd in Genome Data Viewer
Location:
chromosome: Un
Exon count:
16
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952423.1 (3088835..3308394, complement)

NW_013952423.1Genomic Context describing neighboring genes Neighboring gene rho GTPase-activating protein 7-like Neighboring gene arginyl-tRNA synthetase 1 Neighboring gene uncharacterized LOC106514679 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem (nuclear organelle) associated protein 5

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_013952423.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
delta-sarcoglycan
Names
sarcoglycan delta

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952423.1 Reference Austrofundulus_limnaeus-1.0

    Range
    3088835..3308394 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014004073.1 → XP_013859527.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A2I4AVL8
    Conserved Domains (1) summary
    pfam04790
    Location:27 → 251
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_014004076.1 → XP_013859530.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A2I4AVL6
    Conserved Domains (1) summary
    pfam04790
    Location:28 → 252
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_014004074.1 → XP_013859528.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A2I4AVL0
    Conserved Domains (1) summary
    pfam04790
    Location:28 → 252
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_014004075.1 → XP_013859529.1  delta-sarcoglycan isoform X3

    UniProtKB/TrEMBL
    A0A2I4AVK9
    Conserved Domains (1) summary
    pfam04790
    Location:28 → 280
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.