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LOC106513899 torsin-1A-interacting protein 2-like [ Austrofundulus limnaeus ]

Gene ID: 106513899, updated on 19-Oct-2023

Summary

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Gene symbol
LOC106513899
Gene description
torsin-1A-interacting protein 2-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Austrofundulus limnaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Rivulidae; Austrofundulus
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Genomic context

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See LOC106513899 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
8
Annotation release Status Assembly Chr Location
100 current Austrofundulus_limnaeus-1.0 (GCF_001266775.1) Unplaced Scaffold NW_013952417.1 (3968538..3975429, complement)

NW_013952417.1Genomic Context describing neighboring genes Neighboring gene ferric-chelate reductase 1-like Neighboring gene chemokine (C motif) receptor 1a, duplicate 1 Neighboring gene torsin-1A-interacting protein 2-like Neighboring gene olfactomedin-like 2Ba Neighboring gene activating transcription factor 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_013952417.1 Unplaced Scaffold Reference Austrofundulus_limnaeus-1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
torsin-1A-interacting protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Austrofundulus limnaeus Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Austrofundulus_limnaeus-1.0

Genomic

  1. NW_013952417.1 Reference Austrofundulus_limnaeus-1.0

    Range
    3968538..3975429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014002948.1 → XP_013858402.1  torsin-1A-interacting protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A2I4ASD7
    Conserved Domains (1) summary
    pfam05609
    Location:212 → 515
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)

  2. XM_014002947.1 → XP_013858401.1  torsin-1A-interacting protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A2I4ASB8
    Conserved Domains (1) summary
    pfam05609
    Location:213 → 516
    LAP1C; Lamina-associated polypeptide 1C (LAP1C)
Nucleotide Protein
Heading Accession and Version

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