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CHST4 carbohydrate sulfotransferase 4 [ Sus scrofa (pig) ]

Gene ID: 106510480, updated on 13-Mar-2024

Summary

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Official Symbol
CHST4provided by VGNC
Official Full Name
carbohydrate sulfotransferase 4provided by VGNC
Primary source
VGNC:VGNC:86680
See related
Ensembl:ENSSSCG00000002737
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See CHST4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (14532379..14544502)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (14173077..14181166)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene transducin-like enhancer protein 2 Neighboring gene zinc finger protein 23 Neighboring gene zinc finger protein 19 Neighboring gene tyrosine aminotransferase Neighboring gene MARVEL domain containing 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein sulfation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    14532379..14544502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021093820.1 → XP_020949479.1  carbohydrate sulfotransferase 4

    UniProtKB/TrEMBL
    A0A8D1D2T8, A0A8D1YHM9, F1S3D0
    Related
    ENSSSCP00000002954.2, ENSSSCT00000003033.3
    Conserved Domains (1) summary
    pfam13469
    Location:47 → 300
    Sulfotransfer_3; Sulfotransferase family

  2. XM_021093821.1 → XP_020949480.1  carbohydrate sulfotransferase 4

    UniProtKB/TrEMBL
    A0A8D1D2T8, A0A8D1YHM9, F1S3D0
    Related
    ENSSSCP00000038470.1, ENSSSCT00000057292.3
    Conserved Domains (1) summary
    pfam13469
    Location:47 → 300
    Sulfotransfer_3; Sulfotransferase family

  3. XM_021093819.1 → XP_020949478.1  carbohydrate sulfotransferase 4

    UniProtKB/TrEMBL
    A0A8D1D2T8, A0A8D1YHM9, F1S3D0
    Conserved Domains (1) summary
    pfam13469
    Location:47 → 300
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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