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NCBP1 nuclear cap binding protein subunit 1 [ Sus scrofa (pig) ]

Gene ID: 106509205, updated on 17-Aug-2024

Summary

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Official Symbol
NCBP1provided by VGNC
Official Full Name
nuclear cap binding protein subunit 1provided by VGNC
Primary source
VGNC:VGNC:90603
See related
Ensembl:ENSSSCG00000005366
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 13.5), spleen (RPKM 7.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See NCBP1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
24
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (239492573..239543925)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 1 NC_010443.4 (267580587..267659128)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene tudor domain containing 7 Neighboring gene tropomodulin 1 Neighboring gene thiosulfate sulfurtransferase like domain containing 2 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene forkhead box E1 Neighboring gene tRNA methyltransferase O

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA cap binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear cap binding complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear cap-binding protein subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    239492573..239543925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021066300.1 → XP_020921959.1  nuclear cap-binding protein subunit 1

    UniProtKB/TrEMBL
    A0A480V1T9, A0A4X1UA85, A0A8D0T7X3
    Related
    ENSSSCP00000059925.1, ENSSSCT00000085601.1
    Conserved Domains (3) summary
    smart00543
    Location:28 → 240
    MIF4G; Middle domain of eukaryotic initiation factor 4G (eIF4G)
    pfam09088
    Location:351 → 470
    MIF4G_like; MIF4G like
    pfam09090
    Location:485 → 759
    MIF4G_like_2; MIF4G like

RNA

  1. XR_002336867.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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