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GCNT1 glucosaminyl (N-acetyl) transferase 1 [ Sus scrofa (pig) ]

Gene ID: 106508649, updated on 17-Aug-2024

Summary

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Official Symbol
GCNT1provided by VGNC
Official Full Name
glucosaminyl (N-acetyl) transferase 1provided by VGNC
Primary source
VGNC:VGNC:103096
See related
Ensembl:ENSSSCG00000005277
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in ovary (RPKM 2.0), lung (RPKM 0.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
19
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 1 NC_010443.5 (229429020..229602834)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) Unplaced Scaffold NW_003540300.1 (11100..16190)

Chromosome 1 - NC_010443.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110255722 Neighboring gene riboflavin kinase Neighboring gene prune homolog 2 with BCH domain Neighboring gene uncharacterized LOC110255742 Neighboring gene forkhead box B2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase
Names
glucosaminyl (N-acetyl) transferase 1, core 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010443.5 Reference Sscrofa11.1 Primary Assembly

    Range
    229429020..229602834
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003480538.4 → XP_003480586.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase isoform X2

    See identical proteins and their annotated locations for XP_003480586.1

    UniProtKB/TrEMBL
    A0A0B8RZK2, A0A4X1W1G4, A0A4X1W2A6, A0A8D1EET6, A0A8D1JVK3, F1SIN0
    Related
    ENSSSCP00000062171.1, ENSSSCT00000083992.2
    Conserved Domains (1) summary
    pfam02485
    Location:123 → 391
    Branch; Core-2/I-Branching enzyme

  2. XM_021065082.1 → XP_020920741.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A0B8RZK2, A0A4X1W1G4, A0A4X1W2A6, A0A8D1EET6, A0A8D1JVK3, F1SIN0
    Conserved Domains (1) summary
    pfam02485
    Location:123 → 391
    Branch; Core-2/I-Branching enzyme

  3. XM_021065059.1 → XP_020920718.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8D1EET6, A0A8D1JVK3
    Conserved Domains (1) summary
    pfam02485
    Location:181 → 449
    Branch; Core-2/I-Branching enzyme

  4. XM_021065073.1 → XP_020920732.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase isoform X2

    UniProtKB/TrEMBL
    A0A0B8RZK2, A0A4X1W1G4, A0A4X1W2A6, A0A8D1EET6, A0A8D1JVK3, F1SIN0
    Conserved Domains (1) summary
    pfam02485
    Location:123 → 391
    Branch; Core-2/I-Branching enzyme

  5. XM_021065067.1 → XP_020920726.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8D1EET6, A0A8D1JVK3
    Conserved Domains (1) summary
    pfam02485
    Location:181 → 449
    Branch; Core-2/I-Branching enzyme

  6. XM_021065062.1 → XP_020920721.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase isoform X1

    UniProtKB/TrEMBL
    A0A8D1EET6, A0A8D1JVK3
    Conserved Domains (1) summary
    pfam02485
    Location:181 → 449
    Branch; Core-2/I-Branching enzyme

RNA

  1. XR_001306502.2 RNA Sequence

  2. XR_002336467.1 RNA Sequence

  3. XR_001306503.2 RNA Sequence

  4. XR_002336468.1 RNA Sequence

  5. XR_002336469.1 RNA Sequence

  6. XR_002336470.1 RNA Sequence

  7. XR_002336471.1 RNA Sequence

  8. XR_002336473.1 RNA Sequence

  9. XR_002336474.1 RNA Sequence

  10. XR_002336475.1 RNA Sequence

  11. XR_002336472.1 RNA Sequence

  12. XR_002336476.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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