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LRTM1 leucine rich repeats and transmembrane domains 1 [ Sus scrofa (pig) ]

Gene ID: 106505617, updated on 17-Aug-2024

Summary

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Official Symbol
LRTM1provided by VGNC
Official Full Name
leucine rich repeats and transmembrane domains 1provided by VGNC
Primary source
VGNC:VGNC:89865
See related
Ensembl:ENSSSCG00000011461
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Low expression observed in reference dataset See more
Orthologs
human mouse all
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Genomic context

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See LRTM1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
3
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (36870269..36881586, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (40235908..40247046, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 3 Neighboring gene small integral membrane protein 10-like protein 2A Neighboring gene midkine pseudogene Neighboring gene uncharacterized LOC106505619 Neighboring gene uncharacterized LOC106505618

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    36870269..36881586 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021068978.1 → XP_020924637.1  leucine-rich repeat and transmembrane domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1VM55, A0A8D1CAS5, A0A8D1NDW7, F1SGL3
    Related
    ENSSSCP00000035674.1, ENSSSCT00000052800.3
    Conserved Domains (4) summary
    sd00031
    Location:54 → 75
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:33 → 51
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:74 → 134
    LRR_8; Leucine rich repeat
    cl26018
    Location:34 → 181
    NEL; C-terminal novel E3 ligase, LRR-interacting

  2. XM_021068977.1 → XP_020924636.1  leucine-rich repeat and transmembrane domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D1EPS1
    Conserved Domains (4) summary
    sd00031
    Location:99 → 120
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:78 → 96
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:119 → 179
    LRR_8; Leucine rich repeat
    cl26018
    Location:20 → 210
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein
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