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PAPSS1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 [ Sus scrofa (pig) ]

Gene ID: 106504748, updated on 17-Aug-2024

Summary

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Official Symbol
PAPSS1provided by VGNC
Official Full Name
3'-phosphoadenosine 5'-phosphosulfate synthase 1provided by VGNC
Primary source
VGNC:VGNC:91172
See related
Ensembl:ENSSSCG00000031901
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 26.3), lung (RPKM 20.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
14
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (114252059..114369309)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (122548837..122549561)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106504747 Neighboring gene sphingomyelin synthase 2 Neighboring gene microRNA mir-9843 Neighboring gene uncharacterized LOC110262177 Neighboring gene dickkopf WNT signaling pathway inhibitor 2 Neighboring gene uncharacterized LOC106504749

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables adenylylsulfate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sulfate adenylyltransferase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 3'-phosphoadenosine 5'-phosphosulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfate assimilation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    114252059..114369309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021101693.1 → XP_020957352.1  bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 isoform X1

    UniProtKB/TrEMBL
    A0A287A7F4, A0A4X1UVJ4, A0A8D0LWH1, M3VH94
    Related
    ENSSSCP00000039809.3, ENSSSCT00000063231.3
    Conserved Domains (2) summary
    cd00517
    Location:254 → 617
    ATPS; ATP-sulfurylase
    cd02027
    Location:54 → 204
    APSK; Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of ...

  2. XM_021101694.1 → XP_020957353.1  bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 isoform X2

    UniProtKB/TrEMBL
    A0A8D0LX78, A0A8D1VFJ8
    Conserved Domains (2) summary
    cd00517
    Location:244 → 607
    ATPS; ATP-sulfurylase
    pfam01583
    Location:41 → 195
    APS_kinase; Adenylylsulphate kinase

  3. XM_021101695.1 → XP_020957354.1  bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 isoform X3

    UniProtKB/TrEMBL
    A0A4X1UUI3, A0A8D0KL92
    Conserved Domains (2) summary
    cd00517
    Location:233 → 596
    ATPS; ATP-sulfurylase
    pfam01583
    Location:30 → 184
    APS_kinase; Adenylylsulphate kinase
Nucleotide Protein Strain
Heading Accession and Version

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