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LENG8 leukocyte receptor cluster member 8 [ Sus scrofa (pig) ]

Gene ID: 106504183, updated on 17-Aug-2024

Summary

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Official Symbol
LENG8provided by VGNC
Official Full Name
leukocyte receptor cluster member 8provided by VGNC
Primary source
VGNC:VGNC:89681
See related
Ensembl:ENSSSCG00000030857
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 41.7), spleen (RPKM 41.4) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See LENG8 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
17
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 6 NC_010448.4 (58860193..58871138, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 6 NC_010448.3 (53412023..53422877, complement)

Chromosome 6 - NC_010448.4Genomic Context describing neighboring genes Neighboring gene leukocyte-associated immunoglobulin-like receptor 1 Neighboring gene CDC42 effector protein 5 Neighboring gene leukocyte receptor cluster member 9 Neighboring gene tweety family member 1 Neighboring gene uncharacterized LOC106510586 Neighboring gene leukocyte-associated immunoglobulin-like receptor 1 Neighboring gene heat shock factor 2-binding protein-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leukocyte receptor cluster member 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010448.4 Reference Sscrofa11.1 Primary Assembly

    Range
    58860193..58871138 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021094969.1 → XP_020950628.1  leukocyte receptor cluster member 8 isoform X4

    UniProtKB/TrEMBL
    A0A480S4N7, A0A4X1VGY5
    Conserved Domains (2) summary
    cl24019
    Location:561 → 775
    CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
    cl25764
    Location:126 → 277
    PAT1; Topoisomerase II-associated protein PAT1

  2. XM_021094967.1 → XP_020950626.1  leukocyte receptor cluster member 8 isoform X2

    UniProtKB/TrEMBL
    A0A8D1ITH0
    Conserved Domains (2) summary
    cl24019
    Location:561 → 752
    CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
    cl25764
    Location:126 → 277
    PAT1; Topoisomerase II-associated protein PAT1

  3. XM_021094968.1 → XP_020950627.1  leukocyte receptor cluster member 8 isoform X3

    UniProtKB/TrEMBL
    A0A480S4N7, A0A4X1VGY5, K7GPC8
    Related
    ENSSSCP00000029742.2, ENSSSCT00000033934.3
    Conserved Domains (2) summary
    cl24019
    Location:562 → 776
    CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
    cl25764
    Location:126 → 278
    PAT1; Topoisomerase II-associated protein PAT1

  4. XM_021094965.1 → XP_020950624.1  leukocyte receptor cluster member 8 isoform X1

    UniProtKB/TrEMBL
    A0A480HZN8, A0A481BCZ8, A0A4X1VNQ3
    Conserved Domains (2) summary
    cl24019
    Location:562 → 753
    CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
    cl25764
    Location:126 → 278
    PAT1; Topoisomerase II-associated protein PAT1

  5. XM_021094966.1 → XP_020950625.1  leukocyte receptor cluster member 8 isoform X1

    UniProtKB/TrEMBL
    A0A480HZN8, A0A481BCZ8, A0A4X1VNQ3
    Conserved Domains (2) summary
    cl24019
    Location:562 → 753
    CSN8_PSD8_EIF3K; CSN8/PSMD8/EIF3K family
    cl25764
    Location:126 → 278
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
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