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HMGCS1 3-hydroxy-3-methylglutaryl-CoA synthase 1 [ Apteryx mantelli (North Island brown kiwi) ]

Gene ID: 106499533, updated on 28-Aug-2024

Summary

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Gene symbol
HMGCS1
Gene description
3-hydroxy-3-methylglutaryl-CoA synthase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See HMGCS1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current bAptMan1.hap1 (GCF_036417845.1) Z NC_090020.1 (70880559..70897295)

Chromosome Z - NC_090020.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 267 Neighboring gene C-C motif chemokine ligand 28 Neighboring gene NIM1 serine/threonine protein kinase Neighboring gene zinc finger protein 131 Neighboring gene selenoprotein P

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090020.1 Chromosome Z Reference bAptMan1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydroxymethylglutaryl-CoA synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in farnesyl diphosphate biosynthetic process, mevalonate pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hydroxymethylglutaryl-CoA synthase, cytoplasmic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036417845.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAptMan1.hap1

Genomic

  1. NC_090020.1 Reference bAptMan1.hap1

    Range
    70880559..70897295
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067316330.1 → XP_067172431.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X2

  2. XM_067316331.1 → XP_067172432.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X2

  3. XM_067316329.1 → XP_067172430.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X2

  4. XM_067316332.1 → XP_067172433.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X1

  5. XM_067316328.1 → XP_067172429.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X1

  6. XM_067316327.1 → XP_067172428.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X1

  7. XM_013961037.2 → XP_013816491.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A8B7JZK8
    Conserved Domains (1) summary
    TIGR01833
    Location:13 → 470
    HMG-CoA-S_euk; 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

  8. XM_013961036.2 → XP_013816490.1  hydroxymethylglutaryl-CoA synthase, cytoplasmic isoform X2

    UniProtKB/TrEMBL
    A0A8B7JZK8
    Conserved Domains (1) summary
    TIGR01833
    Location:13 → 470
    HMG-CoA-S_euk; 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade
Nucleotide Protein
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