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SPTLC1 serine palmitoyltransferase long chain base subunit 1 [ Apteryx mantelli (North Island brown kiwi) ]

Gene ID: 106499356, updated on 28-Aug-2024

Summary

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Gene symbol
SPTLC1
Gene description
serine palmitoyltransferase long chain base subunit 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See SPTLC1 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_08 current bAptMan1.hap1 (GCF_036417845.1) Z NC_090020.1 (36924110..36959847, complement)

Chromosome Z - NC_090020.1Genomic Context describing neighboring genes Neighboring gene nuclear factor, interleukin 3 regulated Neighboring gene receptor tyrosine kinase like orphan receptor 2 Neighboring gene CDC42 small effector 2 Neighboring gene LYR motif containing 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090020.1 Chromosome Z Reference bAptMan1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine palmitoyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036417845.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAptMan1.hap1

Genomic

  1. NC_090020.1 Reference bAptMan1.hap1

    Range
    36924110..36959847 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067315599.1 → XP_067171700.1  serine palmitoyltransferase 1 isoform X1

  2. XM_067315600.1 → XP_067171701.1  serine palmitoyltransferase 1 isoform X2

RNA

  1. XR_010886861.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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