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CHPF chondroitin polymerizing factor [ Apteryx mantelli (North Island brown kiwi) ]

Gene ID: 106499326, updated on 28-Aug-2024

Summary

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Gene symbol
CHPF
Gene description
chondroitin polymerizing factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See CHPF in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current bAptMan1.hap1 (GCF_036417845.1) 6 NC_089983.1 (32359299..32369348)

Chromosome 6 - NC_089983.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 198 Neighboring gene uncharacterized LOC106499180 Neighboring gene apolipoprotein L3-like Neighboring gene acid sensing ion channel subunit family member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089983.1 Chromosome 6 Reference bAptMan1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036417845.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAptMan1.hap1

Genomic

  1. NC_089983.1 Reference bAptMan1.hap1

    Range
    32359299..32369348
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067299155.1 → XP_067155256.1  chondroitin sulfate synthase 2

Nucleotide Protein
Heading Accession and Version

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