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CHST1 carbohydrate sulfotransferase 1 [ Apteryx mantelli (North Island brown kiwi) ]

Gene ID: 106498277, updated on 28-Aug-2024

Summary

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Gene symbol
CHST1
Gene description
carbohydrate sulfotransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See CHST1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current bAptMan1.hap1 (GCF_036417845.1) 4 NC_089981.1 (46467340..46469548)

Chromosome 4 - NC_089981.1Genomic Context describing neighboring genes Neighboring gene cryptochrome circadian regulator 2 Neighboring gene solute carrier family 35 member C1 Neighboring gene astacin-like metalloendopeptidase Neighboring gene zinc finger FYVE-type containing 19 Neighboring gene protein phosphatase 1 regulatory inhibitor subunit 14D

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089981.1 Chromosome 4 Reference bAptMan1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables keratan sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036417845.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAptMan1.hap1

Genomic

  1. NC_089981.1 Reference bAptMan1.hap1

    Range
    46467340..46469548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013959468.2 → XP_013814922.1  carbohydrate sulfotransferase 1

    UniProtKB/TrEMBL
    A0A8B7JV15
    Conserved Domains (1) summary
    pfam00685
    Location:210 → 392
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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