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SGCD sarcoglycan delta [ Apteryx mantelli (North Island brown kiwi) ]

Gene ID: 106493635, updated on 28-Aug-2024

Summary

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Gene symbol
SGCD
Gene description
sarcoglycan delta
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See SGCD in Genome Data Viewer
Location:
chromosome: 14
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_08 current bAptMan1.hap1 (GCF_036417845.1) 14 NC_089991.1 (11184390..11585117, complement)

Chromosome 14 - NC_089991.1Genomic Context describing neighboring genes Neighboring gene T-cell immunoglobulin and mucin domain-containing protein 4 Neighboring gene mediator complex subunit 7 Neighboring gene mitochondrial ribosomal protein L22 Neighboring gene gem nuclear organelle associated protein 5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089991.1 Chromosome 14 Reference bAptMan1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036417845.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAptMan1.hap1

Genomic

  1. NC_089991.1 Reference bAptMan1.hap1

    Range
    11184390..11585117 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067304856.1 → XP_067160957.1  delta-sarcoglycan isoform X3

  2. XM_013953712.2 → XP_013809166.1  delta-sarcoglycan isoform X1

    UniProtKB/TrEMBL
    A0A8B7JDL1
    Conserved Domains (1) summary
    pfam04790
    Location:47 → 295
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_067304859.1 → XP_067160960.1  delta-sarcoglycan isoform X5

  4. XM_067304855.1 → XP_067160956.1  delta-sarcoglycan isoform X1

  5. XM_067304858.1 → XP_067160959.1  delta-sarcoglycan isoform X5

  6. XM_067304853.1 → XP_067160954.1  delta-sarcoglycan isoform X1

  7. XM_067304862.1 → XP_067160963.1  delta-sarcoglycan isoform X7

  8. XM_067304857.1 → XP_067160958.1  delta-sarcoglycan isoform X5

  9. XM_067304860.1 → XP_067160961.1  delta-sarcoglycan isoform X6

  10. XM_067304851.1 → XP_067160952.1  delta-sarcoglycan isoform X1

  11. XM_067304852.1 → XP_067160953.1  delta-sarcoglycan isoform X1

  12. XM_013953716.2 → XP_013809170.1  delta-sarcoglycan isoform X4

    UniProtKB/TrEMBL
    A0A8B7JDN3
    Conserved Domains (1) summary
    pfam04790
    Location:36 → 284
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  13. XM_013953714.2 → XP_013809168.1  delta-sarcoglycan isoform X2

    UniProtKB/TrEMBL
    A0A8B7JGV4
    Conserved Domains (1) summary
    pfam04790
    Location:42 → 290
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  14. XM_013953718.2 → XP_013809172.1  delta-sarcoglycan isoform X5

    UniProtKB/TrEMBL
    A0A8B7JDL6
    Conserved Domains (1) summary
    pfam04790
    Location:22 → 275
    Sarcoglycan_1; Sarcoglycan complex subunit protein

RNA

  1. XR_010885637.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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