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TKT transketolase [ Apteryx mantelli (North Island brown kiwi) ]

Gene ID: 106488644, updated on 28-Aug-2024

Summary

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Gene symbol
TKT
Gene description
transketolase
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See TKT in Genome Data Viewer
Location:
chromosome: 12
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current bAptMan1.hap1 (GCF_036417845.1) 12 NC_089989.1 (6107436..6132737)

Chromosome 12 - NC_089989.1Genomic Context describing neighboring genes Neighboring gene choline dehydrogenase Neighboring gene uncharacterized LOC106488635 Neighboring gene decapping mRNA 1A Neighboring gene uncharacterized LOC106488597 Neighboring gene BICD cargo adaptor 2 Neighboring gene uncharacterized LOC106488663

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089989.1 Chromosome 12 Reference bAptMan1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transketolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pentose-phosphate shunt, non-oxidative branch IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular exosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transketolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036417845.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAptMan1.hap1

Genomic

  1. NC_089989.1 Reference bAptMan1.hap1

    Range
    6107436..6132737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067303778.1 → XP_067159879.1  transketolase isoform X1

  2. XM_013947562.1 → XP_013803016.1  transketolase isoform X2

    UniProtKB/TrEMBL
    A0A8B7IW31
    Conserved Domains (1) summary
    PRK05899
    Location:1 → 570
    PRK05899; transketolase; Reviewed

  3. XM_013947552.2 → XP_013803006.1  transketolase isoform X2

    UniProtKB/TrEMBL
    A0A8B7IW31
    Conserved Domains (1) summary
    PRK05899
    Location:1 → 570
    PRK05899; transketolase; Reviewed
Nucleotide Protein
Heading Accession and Version

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