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GNPDA1 glucosamine-6-phosphate deaminase 1 [ Apteryx mantelli (North Island brown kiwi) ]

Gene ID: 106487274, updated on 28-Aug-2024

Summary

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Gene symbol
GNPDA1
Gene description
glucosamine-6-phosphate deaminase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See GNPDA1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current bAptMan1.hap1 (GCF_036417845.1) 14 NC_089991.1 (1933398..1938590)

Chromosome 14 - NC_089991.1Genomic Context describing neighboring genes Neighboring gene sprouty RTK signaling antagonist 4 Neighboring gene Nedd4 family interacting protein 1 Neighboring gene ring finger protein 14 Neighboring gene heat shock protein family A (Hsp70) member 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089991.1 Chromosome 14 Reference bAptMan1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucosamine-6-phosphate deaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables identical protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in N-acetylneuraminate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosamine catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glucosamine-6-phosphate isomerase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036417845.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAptMan1.hap1

Genomic

  1. NC_089991.1 Reference bAptMan1.hap1

    Range
    1933398..1938590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013946007.2 → XP_013801461.1  glucosamine-6-phosphate isomerase 1

    UniProtKB/TrEMBL
    A0A8B7IRK5
    Conserved Domains (1) summary
    cl00339
    Location:1 → 253
    SugarP_isomerase; SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL). RPI catalyzes the reversible conversion of ribose-5-phosphate to ...
Nucleotide Protein
Heading Accession and Version

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