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LPIN2 lipin 2 [ Apteryx mantelli (North Island brown kiwi) ]

Gene ID: 106484636, updated on 28-Aug-2024

Summary

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Gene symbol
LPIN2
Gene description
lipin 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Apteryx mantelli
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Palaeognathae; Apterygiformes; Apterygidae; Apteryx
Orthologs
human mouse all
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Genomic context

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See LPIN2 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_08 current bAptMan1.hap1 (GCF_036417845.1) 2 NC_089979.1 (53734480..53783118, complement)

Chromosome 2 - NC_089979.1Genomic Context describing neighboring genes Neighboring gene small ribosomal subunit protein RACK1-like Neighboring gene structural maintenance of chromosomes flexible hinge domain containing 1 Neighboring gene elastin microfibril interfacer 2 Neighboring gene myomesin 1 Neighboring gene myosin regulatory light chain 2, smooth muscle minor isoform

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089979.1 Chromosome 2 Reference bAptMan1.hap1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to insulin stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fatty acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidate phosphatase LPIN2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036417845.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAptMan1.hap1

Genomic

  1. NC_089979.1 Reference bAptMan1.hap1

    Range
    53734480..53783118 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_067290680.1 → XP_067146781.1  phosphatidate phosphatase LPIN2 isoform X2

  2. XM_013942865.2 → XP_013798319.1  phosphatidate phosphatase LPIN2 isoform X1

    UniProtKB/TrEMBL
    A0A8B7IJ57
    Conserved Domains (4) summary
    pfam15017
    Location:899 → 918
    AF1Q; Drug resistance and apoptosis regulator
    pfam04571
    Location:33 → 138
    Lipin_N; lipin, N-terminal conserved region
    pfam08235
    Location:660 → 885
    LNS2; LNS2 (Lipin/Ned1/Smp2)
    pfam16876
    Location:492 → 582
    Lipin_mid; Lipin/Ned1/Smp2 multi-domain protein middle domain

  3. XM_067290681.1 → XP_067146782.1  phosphatidate phosphatase LPIN2 isoform X3

RNA

  1. XR_001292604.2 RNA Sequence

  2. XR_001292603.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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