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RNU6-578P RNA, U6 small nuclear 578, pseudogene [ Homo sapiens (human) ]

Gene ID: 106481904, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-578Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 578, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47541
See related
Ensembl:ENSG00000212282 AllianceGenome:HGNC:47541
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-578P in Genome Data Viewer
Location:
4p15.33
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (12312588..12312690)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (12291114..12291216)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (12314212..12314314)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986179 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:11981013-11981720 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:12029015-12029514 Neighboring gene NANOG hESC enhancer GRCh37_chr4:12244790-12245373 Neighboring gene long intergenic non-protein coding RNA 2270 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:12365807-12366306 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:12422706-12423905 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:12432477-12433676 Neighboring gene uncharacterized LOC105374492 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:12525597-12526098 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:12526099-12526598 Neighboring gene uncharacterized LOC105374490 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:12610801-12611316 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:12611317-12611831 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21323 Neighboring gene extracellular matrix protein 1 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044816.1 

    Range
    101..203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    12312588..12312690
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    12291114..12291216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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