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RNU6-47P RNA, U6 small nuclear 47, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480710, updated on 12-Sep-2024

Summary

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Official Symbol
RNU6-47Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 47, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:34291
See related
Ensembl:ENSG00000206593 AllianceGenome:HGNC:34291
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RNU6-47
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Genomic context

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Location:
5q21.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (109014835..109014940, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (109518270..109518375, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (108350536..108350641, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene FER tyrosine kinase Neighboring gene RACK1 pseudogene 1 Neighboring gene MPRA-validated peak5407 silencer Neighboring gene LSM2 pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:108328417-108329306 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22878 Neighboring gene gap junction protein alpha 1 pseudogene 1 Neighboring gene MPRA-validated peak5410 silencer Neighboring gene uncharacterized LOC124901040 Neighboring gene NANOG hESC enhancer GRCh37_chr5:108506215-108506770

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043484.1 

    Range
    101..206
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    109014835..109014940 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    109518270..109518375 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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