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RNU6-89P RNA, U6 small nuclear 89, pseudogene [ Homo sapiens (human) ]

Gene ID: 106480550, updated on 17-Sep-2024

Summary

Official Symbol
RNU6-89Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 89, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47052
See related
Ensembl:ENSG00000272262 AllianceGenome:HGNC:47052
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

See RNU6-89P in Genome Data Viewer
Location:
1q32.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (202410108..202410207, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (201672173..201672272, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (202379236..202379335, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202305669-202306193 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202306194-202306717 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:202310134-202310759 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1701 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:202317574-202318114 Neighboring gene ubiquitin conjugating enzyme E2 T Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:202328014-202328965 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:202330368-202331110 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:202331111-202331852 Neighboring gene protein phosphatase 1 regulatory subunit 12B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:202333448-202334185 Neighboring gene MPRA-validated peak653 silencer Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202347411-202347912 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:202347913-202348412 Neighboring gene NANOG hESC enhancer GRCh37_chr1:202348949-202349479 Neighboring gene CYCS pseudogene 4 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:202368272-202368533 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:202388755-202389318 Neighboring gene MPRA-validated peak654 silencer Neighboring gene FKBP prolyl isomerase 8 pseudogene Neighboring gene MPRA-validated peak655 silencer Neighboring gene Sharpr-MPRA regulatory region 7043 Neighboring gene ribosomal protein S27 pseudogene 8

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044208.1 

    Range
    101..200
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    202410108..202410207 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    201672173..201672272 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)