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GCSHP1 GCSH pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 106480441, updated on 12-Sep-2024

Summary

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Official Symbol
GCSHP1provided by HGNC
Official Full Name
GCSH pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:43922
See related
AllianceGenome:HGNC:43922
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
5p13.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (39888379..39889010, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (40138575..40139206, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (39888481..39889112, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene CFAP53 pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:39608583-39608764 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_84898 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:39740675-39740901 Neighboring gene integrator complex subunit 6 pseudogene 1 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_84930 Neighboring gene INTS6P1-LINC00603 intergenic CAGE-defined B cell enhancer Neighboring gene long intergenic non-protein coding RNA 603 Neighboring gene keratin 18 pseudogene 56

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

General gene information

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Other Names

  • glycine cleavage system protein H (aminomethyl carrier) pseudogene 1
  • glycine cleavage system protein H pseudogene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_043382.2 

    Range
    101..732
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    39888379..39889010 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    40138575..40139206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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