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RNU6-509P RNA, U6 small nuclear 509, pseudogene [ Homo sapiens (human) ]

Gene ID: 106479792, updated on 17-Sep-2024

Summary

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Official Symbol
RNU6-509Pprovided by HGNC
Official Full Name
RNA, U6 small nuclear 509, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:47472
See related
Ensembl:ENSG00000200389 AllianceGenome:HGNC:47472
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See RNU6-509P in Genome Data Viewer
Location:
3q23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (141902926..141903030, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (144650223..144650327, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (141621768..141621872, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374134 Neighboring gene VISTA enhancer hs2041 Neighboring gene Sharpr-MPRA regulatory region 4874 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14780 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14781 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14782 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 25 Neighboring gene ATPase Na+/K+ transporting subunit beta 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:141623767-141624267 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:141623266-141623766 Neighboring gene uncharacterized LOC124909442 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:141656589-141657435 Neighboring gene transcription factor Dp-2 Neighboring gene ReSE screen-validated silencer GRCh37_chr3:141719615-141719808 Neighboring gene Sharpr-MPRA regulatory region 4576 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14783 Neighboring gene NANOG hESC enhancer GRCh37_chr3:141747218-141747719 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20640 Neighboring gene ribosomal protein L19 pseudogene 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_044290.1 

    Range
    101..205
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

    Range
    141902926..141903030 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060927.1 Alternate T2T-CHM13v2.0

    Range
    144650223..144650327 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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